Contact Information
1206 W. Gregory Dr.
M/C 195
Additional Campus Affiliations
Professor, Physics
Professor, Carl R. Woese Institute for Genomic Biology
Founder Professor, Physics
External Links
Recent Publications
Baur, B., Shin, J., Schreiber, J., Zhang, S., Zhang, Y., Manjunath, M., Song, J. S., Noble, W. S., & Roy, S. (2023). Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. PLoS computational biology, 19(7), Article e1011286. https://doi.org/10.1371/journal.pcbi.1011286
Kim, S., Yuan, J. B., Woods, W. S., Newton, D. A., Perez-Pinera, P., & Song, J. S. (2023). Chromatin structure and context-dependent sequence features control prime editing efficiency. Frontiers in Genetics, 14, Article 1222112. https://doi.org/10.3389/fgene.2023.1222112
Zhang, S., Leistico, J. R., Cho, R. J., Cheng, J. B., & Song, J. S. (2022). Spectral clustering of single-cell multi-omics data on multilayer graphs. Bioinformatics, 38(14), 3600-3608. https://doi.org/10.1093/bioinformatics/btac378
Basu, A., Bobrovnikov, D. G., Qureshi, Z., Kayikcioglu, T., Ngo, T. T. M., Ranjan, A., Eustermann, S., Cieza, B., Morgan, M. T., Hejna, M., Rube, H. T., Hopfner, K-P., Wolberger, C., Song, J. S., & Ha, T. (2021). Measuring DNA mechanics on the genome scale. Nature, 589(7842), 462-467. https://doi.org/10.1038/s41586-020-03052-3
Bulut-Karslioglu, A., Jin, H., Kim, Y. K., Cho, B., Guzman-Ayala, M., Williamson, A. J. K., Hejna, M., Stötzel, M., Whetton, A. D., Song, J. S., & Ramalho-Santos, M. (2021). Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. Nature communications, 12(1), Article 4859. https://doi.org/10.1038/s41467-021-25088-3